Basic Information
Locus ID:
nbisL1-mrna-12595
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 2299106 | 2300371 | - | nbisL1-mrna-12595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 13,866.24 Da | 27.79 | 97.34 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 26 | 120 | 6.6E-25 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 24 | 121 | 2.75E-27 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 11 | 123 | 1.5E-43 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 26 | 120 | 1.5E-33 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 23 | 121 | 1.2E-38 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 81 | 95 | 7.8E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 24 | 37 | 7.8E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 59 | 74 | 7.8E-12 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 22 | 121 | 17.707012 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | NP_190089.2 | - | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A067JES0 | Ribosomal_S10 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_26227 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology