Basic Information
Locus ID:
nbisL1-mrna-12590
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
UBP14
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000000F_pilon | 311443 | 321816 | - | nbisL1-mrna-12590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 96,241.20 Da | 40.72 | 82.52 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02658 | Peptidase_C19B | 352 | 861 | 3.86517E-121 | - |
| Pfam | PF00627 | UBA/TS-N domain | 678 | 714 | 6.5E-6 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 738 | 773 | 1.1E-7 | IPR015940 |
| Pfam | PF17807 | Variant UBP zinc finger | 11 | 73 | 4.0E-22 | IPR041432 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 180 | 233 | 4.6E-13 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 351 | 860 | 6.2E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 347 | 864 | 5.3E-75 | IPR038765 |
| SUPERFAMILY | SSF46934 | UBA-like | 717 | 778 | 8.36E-11 | IPR009060 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 309 | 1.77E-29 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 344 | 643 | 4.2E-60 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 676 | 711 | 5.3E-9 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 712 | 782 | 7.9E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 296 | 3.8E-34 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 104 | 8.1E-34 | IPR013083 |
| SMART | SM00165 | uba_6 | 678 | 716 | 2.4E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 738 | 775 | 1.6E-9 | IPR015940 |
| SMART | SM00290 | Zf_UBP_1 | 179 | 234 | 9.3E-23 | IPR001607 |
| PIRSF | PIRSF016308 | UBP | 276 | 864 | 1.8E-194 | IPR016652 |
| PIRSF | PIRSF016308 | UBP | 2 | 246 | 7.2E-68 | IPR016652 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 178 | 254 | 14.355755 | IPR001607 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 736 | 776 | 13.004739 | IPR015940 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 351 | 863 | 40.575348 | IPR028889 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 676 | 717 | 10.908291 | IPR015940 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 352 | 367 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 808 | 826 | - | IPR018200 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20630.1 | ubiquitin-specific protease 14. Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency. | 0 |
| RefSeq | XP_044473875.1 | ubiquitin carboxyl-terminal hydrolase 14-like isoform X4 [Mangifera indica] | 0 |
| Q8L6Y1 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L4Y0 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38312 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18793, Sbi_jg37227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5053 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006986 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22962, Sgl22969, Sgl28082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008745, gene:ENSEOMG00000031281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0020820, CQ.Regalona.r1.4BG0021600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160200 |
| Apiaceae | Apium graveolens | 1 | Ag4G02697 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004050, scaffold004260G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709890 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.267.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32772 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020069m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043160.2N, BniB07g031450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1181 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1323 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11040 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0172s00020.v1.0, Dusal.0172s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2476 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1709 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005221, Pov_00023321, Pov_00023323, Pov_00031516 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11391, Lb7G35260, Lb7G35262 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.445, AH04.361, BH02.471, BH02.55, CH02.515, CH02.63 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011830, gene-QOZ80_1BG0060450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0240180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050458 |
| Poaceae | Oryza coarctata | 2 | Oco01G003200, Oco02G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G042900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G005470, Chr08G005940, Chr08G005950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G210700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015320, gene_TRIDC3BG019870 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G122900.1, TraesCS3B02G142100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb336890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13186, nbis-gene-6809 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10060, Zma_g7714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2055, evm.TU.LG14.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.247 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13865 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7238, nbisL1-mrna-7239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.398 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009382 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12590 |
| Salicaceae | Populus euphratica | 3 | populus_peu00439, populus_peu17506, populus_peu37691 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620376 |
| Solanaceae | Solanum chilense | 1 | SOLCI003375900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026308 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20660_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0299 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19560.v3.1 |