halophFGD

Basic Information

Locus ID: nbisL1-mrna-12585

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	4104604	4108525	+	nbisL1-mrna-12585

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.60	33,685.07 Da	45.33	75.83	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14299	Phloem protein 2	115	284	2.4E-38	IPR025886
SUPERFAMILY	SSF81383	F-box domain	14	88	4.47E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	18	107	3.8E-5	-
SMART	SM00256	fbox_2	24	64	0.0031	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	18	64	9.523964	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G53000.1	phloem protein 2-A15.
RefSeq	XP_002528637.1	F-box protein PP2-A15 [Ricinus communis]
Swiss-Prot	Q9LF92	F-box protein PP2-A15 OS=Arabidopsis thaliana OX=3702 GN=PP2A15 PE=2 SV=1
TrEMBL	A0A2P2J6G5	ATPP2-A13 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg10159, jg2325, jg23425, jg26853, jg29657, jg31987, jg37155 ... jg4841, jg7598
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1398, gene_14790, gene_3186
Amaranthaceae	Atriplex hortensis	6	Ah003776, Ah009148, Ah016862, Ah018956, Ah023080, Ah030806
Amaranthaceae	Beta vulgaris	2	BVRB_5g101050, BVRB_7g160710
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15524, Sbi_jg23708, Sbi_jg27493, Sbi_jg33232 ... Sbi_jg4420, Sbi_jg49335, Sbi_jg7549
Amaranthaceae	Salicornia europaea	4	Seu_jg12488, Seu_jg26792, Seu_jg5849, Seu_jg7946
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000370, GOSA_00001269, GOSA_00005652, GOSA_00005653 ... GOSA_00006579
Amaranthaceae	Suaeda glauca	7	Sgl02042, Sgl07196, Sgl11165, Sgl51901, Sgl57194, Sgl71364 ... Sgl74957
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000001746, gene:ENSEOMG00000006543 ... gene:ENSEOMG00000006656, gene:ENSEOMG00000015627, gene:ENSEOMG00000021200, gene:ENSEOMG00000024442, gene:ENSEOMG00000031125, gene:ENSEOMG00000035630, gene:ENSEOMG00000037714, gene:ENSEOMG00000040134, gene:ENSEOMG00000045808, gene:ENSEOMG00000045846
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0004960, CQ.Regalona.r1.2BG0024250 ... CQ.Regalona.r1.3AG0002380, CQ.Regalona.r1.3BG0002530, CQ.Regalona.r1.5AG0007730, CQ.Regalona.r1.5BG0008500, CQ.Regalona.r1.7AG0019380, CQ.Regalona.r1.7BG0021970
Anacardiaceae	Pistacia vera	4	pistato.v30003790, pistato.v30143640, pistato.v30182320 ... pistato.v30274430
Apiaceae	Apium graveolens	5	Ag10G02006, Ag2G01979, Ag5G01100, Ag6G01805, Ag9G02837
Arecaceae	Cocos nucifera	3	COCNU_08G006340, COCNU_08G006350, COCNU_09G001440
Arecaceae	Phoenix dactylifera	5	gene-LOC103698736, gene-LOC103711142, gene-LOC103715069 ... gene-LOC103720766, gene-LOC120109120
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1777.V1.1, AsparagusV1_04.3065.V1.1 ... AsparagusV1_08.387.V1.1
Asteraceae	Flaveria trinervia	10	Ftri14G03519, Ftri15G10047, Ftri16G00330, Ftri16G26758 ... Ftri2G22584, Ftri3G03509, Ftri5G12000, Ftri6G06780, Ftri6G28424, Ftri7G19720
Brassicaceae	Arabidopsis thaliana	5	AT1G12710.1, AT1G63090.1, AT3G53000.1, AT3G61060.2 ... AT5G52120.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006134m.g.v1.0, Thhalv10008388m.g.v1.0 ... Thhalv10010582m.g.v1.0, Thhalv10014258m.g.v1.0, Thhalv10023623m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g11290.v2.2, Sp2g01500.v2.2, Sp4g18880.v2.2 ... Sp5g02300.v2.2, Sp5g09320.v2.2, SpUn0060_0060.v2.2
Brassicaceae	Brassica nigra	8	BniB02g058540.2N, BniB04g021870.2N, BniB04g027420.2N ... BniB06g062220.2N, BniB08g017450.2N, BniB08g023130.2N, BniB08g023190.2N, BniB08g067390.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G1517, Ceq02G2088, Ceq03G0455, Ceq05G0623
Casuarinaceae	Casuarina glauca	4	Cgl02G1571, Cgl02G2161, Cgl03G0558, Cgl05G0641
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g04280, gene.Cymno10g10580, gene.Cymno12g04330 ... gene.Cymno16g05550
Dunaliellaceae	Dunaliella salina	3	Dusal.0088s00023.v1.0, Dusal.0185s00020.v1.0 ... Dusal.0457s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g05100, gene.Thate02g12160, gene.Thate08g18170
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6124
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1574, evm.TU.LG01.2157, evm.TU.LG04.933 ... evm.TU.LG10.1344
Plantaginaceae	Plantago ovata	3	Pov_00003113, Pov_00004955, Pov_00016748
Plumbaginaceae	Limonium bicolor	6	Lb1G07866, Lb1G07871, Lb2G10769, Lb2G10967, Lb2G14104 ... Lb7G34025
Poaceae	Echinochloa crus-galli	14	AH01.5078, AH03.2669, AH07.2985, AH09.1982, BH01.3499 ... BH01.5215, BH03.2813, BH07.2809, BH09.2143, CH03.3015, CH07.2885, CH09.2287, CH09.281, Contig786.27
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0114270, gene-QOZ80_2AG0140660 ... gene-QOZ80_2BG0168070, gene-QOZ80_2BG0196320, gene-QOZ80_3AG0231090, gene-QOZ80_3BG0296730, gene-QOZ80_4AG0306920, gene-QOZ80_4BG0337940, gene-QOZ80_6AG0528970, gene-QOZ80_6BG0482980
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0051310.1, HORVU.MOREX.r3.2HG0187120.1 ... HORVU.MOREX.r3.4HG0413770.1, HORVU.MOREX.r3.5HG0497800.1, HORVU.MOREX.r3.6HG0603470.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006768, gene-QYE76_007846, gene-QYE76_012177 ... gene-QYE76_024364, gene-QYE76_071371
Poaceae	Oryza coarctata	9	Oco04G018790, Oco05G000980, Oco07G013540, Oco08G013030 ... Oco17G009840, Oco18G001410, Oco18G009860, Oco19G008420, Oco20G008260
Poaceae	Oryza sativa	6	LOC_Os02g13160.1, LOC_Os02g45320.1, LOC_Os03g02550.1 ... LOC_Os04g48270.3, LOC_Os09g35680.1, LOC_Os10g37830.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G308800, gene-BS78_01G506100 ... gene-BS78_02G248100, gene-BS78_04G241200, gene-BS78_06G204800
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0100701, Pt_Chr0100791, Pt_Chr0203708, Pt_Chr0503027 ... Pt_Chr0503034, Pt_Chr0701197
Poaceae	Sporobolus alterniflorus	13	Chr04G006360, Chr06G005210, Chr06G029160, Chr07G005250 ... Chr09G003140, Chr09G023610, Chr10G013680, Chr11G008660, Chr13G021730, Chr15G006790, Chr15G020370, Chr23G006200, Chr25G005130
Poaceae	Thinopyrum elongatum	5	Tel1E01G325600, Tel2E01G690700, Tel4E01G585400 ... Tel5E01G500700, Tel6E01G477200
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG028540, gene_TRIDC1BG032930 ... gene_TRIDC2AG057850, gene_TRIDC2BG060750, gene_TRIDC4BG059550, gene_TRIDC5AG046450, gene_TRIDC5AG074530, gene_TRIDC5BG050250, gene_TRIDC6AG039420, gene_TRIDC6BG046250
Poaceae	Triticum aestivum	15	TraesCS1A02G188700.1, TraesCS1B02G196400.1 ... TraesCS1D02G187700.1, TraesCS2A02G400100.1, TraesCS2B02G418200.2, TraesCS2D02G397700.1, TraesCS4B02G356300.1, TraesCS4D02G350000.1, TraesCS5A02G312700.1, TraesCS5A02G525700.1, TraesCS5B02G313700.1, TraesCS5D02G319500.1, TraesCS6A02G256100.1, TraesCS6B02G269300.1, TraesCS6D02G237300.1
Poaceae	Zea mays	11	Zm00001eb001120_P001, Zm00001eb021380_P001 ... Zm00001eb073610_P001, Zm00001eb187160_P001, Zm00001eb239060_P001, Zm00001eb248010_P001, Zm00001eb266640_P001, Zm00001eb319000_P001, Zm00001eb324910_P001, Zm00001eb413460_P001, Zm00001eb428650_P001
Poaceae	Zoysia japonica	9	nbis-gene-22284, nbis-gene-22601, nbis-gene-34440 ... nbis-gene-35353, nbis-gene-36128, nbis-gene-4732, nbis-gene-49632, nbis-gene-7136, nbis-gene-9172
Poaceae	Zoysia macrostachya	7	Zma_g12787, Zma_g14116, Zma_g15545, Zma_g16863, Zma_g20267 ... Zma_g30050, Zma_g4575
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.2284, evm.TU.LG04.2345, evm.TU.LG04.3436 ... evm.TU.LG10.297, evm.TU.LG11.1595, evm.TU.LG16.151, evm.TU.LG17.1332, evm.TU.LG17.296, evm.TU.LG19.950
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g10480, gene.Posoc06g11780, gene.Posoc09g02650
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1347, evm.TU.Scaffold_2_RagTag.952 ... evm.TU.Scaffold_14_RagTag.233, evm.TU.Scaffold_16_RagTag.221, evm.TU.Scaffold_9_RagTag.397
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18146, nbisL1-mrna-21739, nbisL1-mrna-22465 ... nbisL1-mrna-4256
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15983, nbisL1-mrna-18852, nbisL1-mrna-4189 ... nbisL1-mrna-6252
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10055, nbisL1-mrna-12919, nbisL1-mrna-20288 ... nbisL1-mrna-7110, nbisL1-mrna-8477
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.299, evm.TU.utg000007l.231 ... evm.TU.utg000009l.926, evm.TU.utg000010l.347, evm.TU.utg000022l.358
Rhizophoraceae	Kandelia obovata	5	Maker00004949, Maker00008988, Maker00009767, Maker00014453 ... Maker00018712
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-1055, nbisL1-mrna-12585, nbisL1-mrna-16073 ... nbisL1-mrna-3501, nbisL1-mrna-6886
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10849, nbisL1-mrna-12738, nbisL1-mrna-20620 ... nbisL1-mrna-5788, nbisL1-mrna-6647
Salicaceae	Populus euphratica	7	populus_peu03510, populus_peu11599, populus_peu27784 ... populus_peu29236, populus_peu30597, populus_peu31712, populus_peu34343
Solanaceae	Lycium barbarum	8	gene-LOC132603855, gene-LOC132606968, gene-LOC132607153 ... gene-LOC132609879, gene-LOC132629929, gene-LOC132631843, gene-LOC132634969, gene-LOC132645672
Solanaceae	Solanum chilense	8	SOLCI000086300, SOLCI001285500, SOLCI001683800 ... SOLCI001696900, SOLCI003410900, SOLCI003915500, SOLCI004644500, SOLCI005170800
Solanaceae	Solanum pennellii	8	gene-LOC107001939, gene-LOC107002714, gene-LOC107002822 ... gene-LOC107007554, gene-LOC107013964, gene-LOC107026696, gene-LOC107029526, gene-LOC107032397
Tamaricaceae	Reaumuria soongarica	3	STRG.1049_chr01_+, STRG.24154_chr05_-, STRG.29156_chr11_+
Tamaricaceae	Tamarix chinensis	4	TC00000030, TC01G4527, TC03G2486, TC09G2162
Zosteraceae	Zostera marina	4	Zosma01g07570.v3.1, Zosma01g35950.v3.1, Zosma05g33430.v3.1 ... Zosma06g12000.v3.1