Basic Information
Locus ID:
nbisL1-mrna-12516
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 1733393 | 1736431 | + | nbisL1-mrna-12516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 53,476.06 Da | 49.93 | 80.30 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 131 | 443 | 4.62364E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 321 | 4.1E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 152 | 214 | 3.8E-8 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 273 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 443 | 6.04E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 65 | 394 | 1.6E-92 | IPR015943 |
| SMART | SM00320 | WD40_4 | 324 | 368 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 190 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 321 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 9.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 230 | 0.0018 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 273 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 444 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 199 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 282 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 330 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 177 | 191 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 430 | 444 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_021640171.1 | cell division cycle 20.2, cofactor of APC complex-like [Hevea brasiliensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UID3 | WD_REPEATS_REGION domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G042200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology