Basic Information
Locus ID:
nbisL1-mrna-12514
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3295264 | 3301608 | - | nbisL1-mrna-12514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 111,966.36 Da | 42.63 | 83.97 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 809 | 979 | 1.46977E-54 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 371 | 978 | 1.0E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 369 | 981 | 1.08E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 775 | 982 | 1.0E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 368 | 606 | 1.5E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 371 | 981 | 57.369884 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 372 | 387 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 924 | 941 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 754 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021623282.1 | ubiquitin carboxyl-terminal hydrolase 8 [Manihot esculenta] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M494 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology