Basic Information
Locus ID:
nbisL1-mrna-12475
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Tyr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2976930 | 2983801 | - | nbisL1-mrna-12475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 75,238.32 Da | 37.32 | 77.24 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 173 | 301 | 1.37093E-58 | - |
| CDD | cd16571 | RING-HC_SIAHs | 57 | 95 | 6.7387E-15 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 394 | 667 | 9.3E-44 | IPR001245 |
| Pfam | PF03145 | Seven in absentia protein family | 101 | 300 | 9.7E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 99 | 4.32E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 112 | 304 | 1.63E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 366 | 667 | 6.83E-69 | IPR011009 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 300 | 1.6E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 113 | 4.9E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 354 | 465 | 2.8E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 467 | 676 | 1.7E-57 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 167 | 7.9E-15 | IPR013083 |
| SMART | SM00219 | tyrkin_6 | 389 | 667 | 2.7E-24 | IPR020635 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 95 | 9.199359 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 112 | 172 | 13.972197 | IPR013010 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 389 | 671 | 34.944206 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 395 | 418 | - | IPR017441 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 517 | 529 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41970.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_024458201.1 | probable protein kinase At2g41970 [Populus trichocarpa] | 0 |
| P93749 | Probable protein kinase At2g41970 OS=Arabidopsis thaliana OX=3702 GN=At2g41970 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3KYD5 | RING-type E3 ubiquitin transferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_00131 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12475 |