Basic Information
Locus ID:
nbisL1-mrna-12474
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
phospholipase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 31731497 | 31732823 | - | nbisL1-mrna-12474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 24,409.13 Da | 44.55 | 70.46 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 112 | 146 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31480.1 | shoot gravitropism 2 (SGR2). encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole. | 0 |
| RefSeq | XP_039061235.1 | phospholipase SGR2-like, partial [Hibiscus syriacus] | 0 |
| Q8W5R2 | Phospholipase SGR2 OS=Arabidopsis thaliana OX=3702 GN=SGR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J8P9R1 | DDHD domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_016535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22767 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024867 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20651, Sbi_jg23108 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16969 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016816 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12621, Sgl17886, Sgl75932 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015689, gene:ENSEOMG00000035581 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0016300, CQ.Regalona.r1.1BG0009400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30034020, pistato.v30035460 |
| Apiaceae | Apium graveolens | 1 | Ag8G01627 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G021460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719489 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2784.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G09987, Ftri8G14487 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006721m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g27280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g047340.2N, BniB07g019170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1672 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1727 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g09200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12474, nbisL1-mrna-12475, nbisL1-mrna-1749 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025515 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11506 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.91, BH03.4307, BH08.40, CH08.158 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0552200, gene-QOZ80_7BG0583200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0705980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033247 |
| Poaceae | Oryza coarctata | 1 | Oco16G000660 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G006700, gene-BS78_07G013700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402670 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G027650, Chr24G002530, Chr28G000320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G551500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045010, gene_TRIDC7BG036410 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G320600.1, TraesCS7B02G221600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb174090_P001, Zm00001eb260480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51934 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22361 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1248, evm.TU.LG05.1784 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g10150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1348, evm.TU.Scaffold_8_RagTag.492 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20142, nbisL1-mrna-20159, nbisL1-mrna-9770 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13499, nbisL1-mrna-2234 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13308, nbisL1-mrna-18077 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.279, evm.TU.utg000018l.679 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003817, Maker00012069 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-9021, nbisL1-mrna-9608 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18548, nbisL1-mrna-18673 |
| Salicaceae | Populus euphratica | 2 | populus_peu16479, populus_peu19030 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625237 |
| Solanaceae | Solanum chilense | 1 | SOLCI007436000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007982 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2482 |
| Zosteraceae | Zostera marina | 2 | Zosma04g15890.v3.1, Zosma05g01320.v3.1 |