Basic Information
Locus ID:
nbisL1-mrna-12469
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 2418190 | 2423633 | + | nbisL1-mrna-12469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 60,130.73 Da | 54.46 | 78.91 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 123 | 163 | 1.54295E-20 | - |
| Pfam | PF00412 | LIM domain | 123 | 160 | 3.0E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 313 | 529 | 6.0E-92 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 116 | 148 | 1.78E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 117 | 174 | 2.3E-11 | - |
| SMART | SM00726 | uim | 46 | 65 | 0.26 | IPR003903 |
| SMART | SM00726 | uim | 77 | 96 | 0.078 | IPR003903 |
| SMART | SM00132 | lim_4 | 122 | 175 | 1.3E-5 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 121 | 186 | 10.0981 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 9.039273 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 9.400304 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 123 | 157 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_021612349.2 | protein DA1 [Manihot esculenta] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VWW7 | LIM zinc-binding domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_05G164200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology