Basic Information
Locus ID:
nbisL1-mrna-12450
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
NEP1-interacting protein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 2017137 | 2019352 | + | nbisL1-mrna-12450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 29,160.12 Da | 48.60 | 91.49 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 224 | 266 | 9.82935E-16 | - |
| Pfam | PF13639 | Ring finger domain | 224 | 266 | 9.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 269 | 7.34E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 269 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 224 | 265 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 266 | 12.356501 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050224786.1 | NEP1-interacting protein-like 2 [Mercurialis annua] | 0 |
| Q8LBA0 | NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067KHI3 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13802 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000814 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31085, Sbi_jg58187 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25801 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004661 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54732, Sgl60033 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005301, gene:ENSEOMG00000022284 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144370 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702740 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G08128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019108m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g052890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1744 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.640 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.920, AH07.3449, BH07.3278, CH06.1047, CH07.3329 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145430, gene-QOZ80_2BG0200870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0615480.1, HORVU.MOREX.r3.7HG0666820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024893 |
| Poaceae | Oryza coarctata | 4 | Oco03G021400, Oco04G022030, Oco11G005990, Oco12G006030 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50990.1, LOC_Os06g12560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G276300, gene-BS78_10G097700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203339, Pt_Chr0301176, Pt_Chr0404757, Pt_Chr0603412 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G002420, Chr09G020350, Chr11G019460, Chr13G004510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G551300, Tel7E01G350200 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2BG008010, gene_TRIDC6AG046380 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2B02G019500.1, TraesCS2D02G005100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb194620_P002, Zm00001eb254430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35141, nbis-gene-8733 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14412, Zma_g31635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2664, evm.TU.LG14.1798 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.861 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14540 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20301 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12450 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.12 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008850 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19366_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2366 |