Basic Information
Locus ID:
nbisL1-mrna-12450
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 1223062 | 1227333 | + | nbisL1-mrna-12450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 112,816.32 Da | 33.19 | 96.66 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 538 | 560 | 0.46 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 83 | 142 | 6.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 202 | 262 | 1.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 275 | 334 | 1.8E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 78 | 0.0032 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 371 | 392 | 0.47 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 718 | 987 | 3.1E-47 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 314 | 623 | 3.66E-57 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 408 | 2.28E-66 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 718 | 990 | 2.56E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 794 | 1006 | 1.4E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 698 | 793 | 5.9E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 288 | 6.0E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 389 | 631 | 7.2E-62 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 388 | 8.8E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 194 | 2.8E-40 | IPR032675 |
| SMART | SM00220 | serkin_6 | 715 | 994 | 1.5E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 441 | 465 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 345 | 369 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 583 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 153 | 5.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 5.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 201 | 225 | 130.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 299 | 322 | 7.527138 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 715 | 999 | 38.265697 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 841 | 853 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 721 | 744 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61480.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_034888200.1 | leucine-rich repeat receptor-like protein kinase TDR [Populus alba] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PUQ2 | Protein kinase domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000176810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology