Basic Information
Locus ID:
nbisL1-mrna-12431
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2493599 | 2497842 | - | nbisL1-mrna-12431 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 66,032.62 Da | 43.45 | 76.70 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 507 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 436 | 468 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 344 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 275 | 299 | 2.09E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 312 | 598 | 6.71E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 362 | 603 | 3.5E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 361 | 7.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 471 | 508 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 468 | 8.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 344 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 595 | 39.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 275 | 300 | 1.9E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 45 | 70 | 0.0014 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 344 | 10.047417 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 45 | 71 | 11.58202 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 438 | 471 | 10.68014 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 274 | 301 | 12.577264 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 507 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 438 | 477 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 507 | 10.675542 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 455 | 469 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 331 | 345 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 455 | 469 | 4.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 495 | 509 | 4.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 101 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_011035505.1 | PREDICTED: zinc finger CCCH domain-containing protein 63-like [Populus euphratica] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LRG6 | Zinc finger CCCH domain-containing protein 63-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology