Basic Information
Locus ID:
nbisL1-mrna-12428
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 1988325 | 1992901 | - | nbisL1-mrna-12428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 53,591.85 Da | 41.24 | 86.06 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 26 | 347 | 2.7E-76 | IPR000490 |
| Pfam | PF07983 | X8 domain | 361 | 431 | 9.3E-20 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 26 | 346 | 1.48E-78 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 355 | 456 | 4.9E-10 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 25 | 354 | 3.3E-111 | - |
| SMART | SM00768 | X8_cls | 360 | 445 | 8.5E-44 | IPR012946 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_048235032.1 | glucan endo-1,3-beta-glucosidase 4-like [Ricinus communis] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IV04 | glucan endo-1,3-beta-D-glucosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology