Basic Information
Locus ID:
nbisL1-mrna-12427
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 1984357 | 1985328 | + | nbisL1-mrna-12427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 35,927.91 Da | 55.93 | 63.03 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 116 | 158 | 6.3E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 161 | 206 | 4.3E-12 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 51 | 4.58E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 82 | 256 | 7.98E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 54 | 273 | 1.1E-35 | IPR015915 |
| SMART | SM00256 | fbox_2 | 13 | 53 | 9.2E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 172 | 219 | 8.5E-8 | IPR006652 |
| SMART | SM00612 | kelc_smart | 123 | 171 | 8.4E-6 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011048231.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8ANU4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_003619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology