Basic Information
Locus ID:
nbisL1-mrna-12413
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2248395 | 2254425 | - | nbisL1-mrna-12413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 43,978.12 Da | 38.58 | 93.61 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 74 | 336 | 3.6E-83 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 97 | 335 | 1.83E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 100 | 388 | 9.0E-91 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 267 | 341 | 18.923235 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 101 | 260 | 28.950846 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 282 | 290 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 312 | 341 | 6.1E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 279 | 307 | 6.1E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 193 | 222 | 6.1E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 231 | 260 | 6.1E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 365 | 382 | 6.1E-58 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 159 | 188 | 6.1E-58 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_030957883.1 | DNA repair protein recA homolog 2, mitochondrial-like [Quercus lobata] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J3I4 | DNA repair protein recA homolog 2-like isoform X1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology