Basic Information
Locus ID:
nbisL1-mrna-12399
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
DNA damage response protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2103834 | 2107345 | + | nbisL1-mrna-12399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 36,739.30 Da | 53.78 | 68.38 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07344 | M48_yhfN_like | 83 | 125 | 0.00515007 | - |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 261 | 284 | 3.4E-6 | IPR001876 |
| Pfam | PF08325 | WLM domain | 8 | 203 | 2.1E-56 | IPR013536 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 257 | 284 | 1.2E-6 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 256 | 293 | 3.7E-7 | - |
| SMART | SM00547 | zf_4 | 292 | 316 | 0.28 | IPR001876 |
| SMART | SM00547 | zf_4 | 259 | 283 | 0.051 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 255 | 286 | 8.445077 | IPR001876 |
| ProSiteProfiles | PS51397 | WLM domain profile. | 1 | 204 | 40.401546 | IPR013536 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 294 | 313 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 261 | 280 | - | IPR001876 |
| Coils | Coil | Coil | 106 | 126 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55915.1 | zinc ion binding. | 0 |
| RefSeq | XP_050289111.1 | DNA-dependent metalloprotease WSS1-like [Quercus robur] | 0 |
| P38838 | DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K1E2 | DNA-dependent metalloprotease WSS1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17956, jg24598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12147 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009024, Ah028602 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090090 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18482, Sbi_jg26803, Sbi_jg33766, Sbi_jg36882 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4768, Seu_jg8454 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011702, GOSA_00017358 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23533, Sgl28662, Sgl73568, Sgl77119 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005205, gene:ENSEOMG00000006799 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.1BG0007060, CQ.Regalona.r1.1BG0007230 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30130900, pistato.v30152750, pistato.v30155050 |
| Apiaceae | Apium graveolens | 2 | Ag2G01703, Ag6G01348 |
| Arecaceae | Cocos nucifera | 1 | scaffold019932G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718405 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2527.V1.1, AsparagusV1_08.3169.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G11350, Ftri15G12980 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55915.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011589m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g000470.2N, BniB07g056380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1468 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1633 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0780s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39930 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.644, evm.TU.LG05.2019 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00014379, Pov_00028884, Pov_00041472 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37810, Lb1G07355, Lb7G34403, Lb7G34404, Lb7G34410 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.600, BH06.666, CH06.679 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511890, gene-QOZ80_6BG0463790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0660300.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_016413, gene-QYE76_016415, gene-QYE76_027497 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G004210, Oco12G004210 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g09170.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G070400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405191, Pt_Chr0405782 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021200, Chr14G003030, Chr21G002280 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G539700, Tel5E01G542400, Tel5E01G542700 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG016500, gene_TRIDC7AG018980 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4D02G333700.1, TraesCS7A02G154800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb374280_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4971 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29252 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1210, evm.TU.LG12.549, evm.TU.LG23.287 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g14160, gene.Posoc03g16490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1207, evm.TU.Scaffold_8_RagTag.1634 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3869, nbisL1-mrna-8775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15063 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.497, evm.TU.utg000018l.41 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003488, Maker00005018 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12399, nbisL1-mrna-9383 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23765, nbisL1-mrna-5514 |
| Salicaceae | Populus euphratica | 4 | populus_peu05997, populus_peu17818, populus_peu17819 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633576, gene-LOC132636297 |
| Solanaceae | Solanum chilense | 1 | SOLCI003998300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007624 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24641_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2488 |
| Zosteraceae | Zostera marina | 3 | Zosma03g06040.v3.1, Zosma1151g00020.v3.1 ... |