Basic Information
Locus ID:
nbisL1-mrna-12390
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1983651 | 2000267 | + | nbisL1-mrna-12390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 130,547.27 Da | 42.46 | 80.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 176 | 5.40321E-41 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 194 | 522 | 1.05167E-167 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 873 | 4.4E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 58 | 177 | 2.4E-20 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 517 | 3.2E-45 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 883 | 1093 | 1.3E-55 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 185 | 2.94E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 549 | 1.16E-96 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 192 | 521 | 1.1E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 798 | 2.8E-46 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 191 | 1.7E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 896 | 3.1E-28 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 1.1E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 520 | 40.203407 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.621994 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| Coils | Coil | Coil | 533 | 561 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021617630.1 | ubiquitin C-terminal hydrolase 12 isoform X9 [Manihot esculenta] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFP2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology