Basic Information
Locus ID:
nbisL1-mrna-12389
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 1749614 | 1751252 | - | nbisL1-mrna-12389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 50,615.14 Da | 49.36 | 80.02 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 176 | 302 | 2.0E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 170 | 301 | 2.36E-24 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 124 | 412 | 1.8E-45 | IPR016135 |
| SMART | SM00212 | ubc_7 | 175 | 352 | 7.5E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 172 | 352 | 20.426498 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_011001108.1 | PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Populus euphratica] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2X9B1 | UBC core domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_022608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8985 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004504 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01756, Sgl01759, Sgl06915, Sgl06917, Sgl65488, Sgl65652 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000024363 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016482 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1705 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6381 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.22 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22086 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12389 |
| Salicaceae | Populus euphratica | 1 | populus_peu16603 |
| Solanaceae | Solanum chilense | 1 | SOLCI000868500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016034 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1743 |