Basic Information
Locus ID:
nbisL1-mrna-12382
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Lysosomal alpha-mannosidase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 725466 | 733339 | - | nbisL1-mrna-12382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 114,549.62 Da | 37.89 | 85.48 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 317 | 1.68674E-176 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 448 | 5.4E-21 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 820 | 1.8E-47 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1011 | 1.2E-9 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 353 | 1.9E-90 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 354 | 1.33E-104 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1014 | 7.85E-136 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 452 | 5.23E-28 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 600 | 2.3E-28 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 321 | 7.5E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 399 | 1.3E-30 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 868 | 2.5E-90 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 455 | 1.1E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1015 | 6.5E-32 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 4.1E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_002511094.1 | probable alpha-mannosidase At5g13980 [Ricinus communis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | B9RA69 | Alpha-mannosidase OS=Ricinus communis OX=3988 GN=RCOM_1503670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology