Basic Information
Locus ID:
nbisL1-mrna-12381
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 1538052 | 1539461 | + | nbisL1-mrna-12381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 52,008.01 Da | 36.31 | 92.58 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 398 | 423 | 8.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 297 | 323 | 0.091 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 93 | 121 | 0.0015 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 222 | 269 | 1.2E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 123 | 153 | 1.4E-6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 378 | 445 | 1.9E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 176 | 274 | 7.5E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 46 | 175 | 3.3E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 275 | 377 | 8.5E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 398 | 423 | 9.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 92 | 122 | 0.0032 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 123 | 157 | 6.2E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 8.549871 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 121 | 155 | 10.621557 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 323 | 357 | 8.648523 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 393 | 423 | 8.823904 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33170.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021603515.1 | pentatricopeptide repeat-containing protein At4g33170 [Manihot esculenta] | 0 |
| Q9SMZ2 | Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9WG78 | Pentatricopeptide repeat-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G220400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11248 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25745, Sbi_jg9569 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19068 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027955 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43994, Sgl48763 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032915 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010700, CQ.Regalona.r1.8BG0013250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30147670 |
| Apiaceae | Apium graveolens | 3 | Ag8G00446, Ag8G00447, Ag8G00456 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722287 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.972.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1761 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.195 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019796, Pov_00019797 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2701, BH09.2938, CH09.3147 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299520, gene-QOZ80_4BG0330210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210280.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047403 |
| Poaceae | Oryza coarctata | 2 | Oco07G019200, Oco08G018450 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G285700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300156 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000970, Chr26G018310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G955000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG077900, gene_TRIDC2BG085350 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G555200.1.cds1, TraesCS2B02G588700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6189 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.525, evm.TU.LG04.239 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.773 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14448 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-216 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12381 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000061l.12 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17107 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632400 |
| Solanaceae | Solanum chilense | 1 | SOLCI006293100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013065 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9558 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1770 |
| Zosteraceae | Zostera marina | 1 | Zosma01g08490.v3.1 |