Basic Information
Locus ID:
nbisL1-mrna-12378
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 1669508 | 1675176 | - | nbisL1-mrna-12378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 85,313.55 Da | 45.03 | 76.38 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 44 | 152 | 3.8691E-25 | - |
| Pfam | PF00069 | Protein kinase domain | 441 | 694 | 3.1E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 419 | 697 | 5.4E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 406 | 511 | 4.7E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 512 | 717 | 1.7E-48 | - |
| SMART | SM00220 | serkin_6 | 439 | 708 | 3.7E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 439 | 715 | 35.311691 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 557 | 569 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 275 | - | - |
| Coils | Coil | Coil | 367 | 387 | - | - |
| Coils | Coil | Coil | 307 | 327 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_021681652.1 | U-box domain-containing protein 52-like [Hevea brasiliensis] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1Q3CFF2 | Pkinase domain-containing protein/Usp domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology