Basic Information
Locus ID:
nbisL1-mrna-12373
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 1501773 | 1503110 | - | nbisL1-mrna-12373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 49,650.77 Da | 34.79 | 99.69 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 76 | 6.8019E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 101 | 1.5E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 146 | 423 | 5.32E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 104 | 1.15E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 126 | 423 | 3.0E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 107 | 1.4E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 8.3E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 40.515072 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021660674.1 | U-box domain-containing protein 21-like [Hevea brasiliensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6M632 | RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_000804 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology