Basic Information
Locus ID:
nbisL1-mrna-12351
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 1332780 | 1336591 | + | nbisL1-mrna-12351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 47,497.95 Da | 46.72 | 71.35 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 343 | 371 | 1.1E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 304 | 332 | 1.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 267 | 289 | 1.7E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 303 | 331 | 2.59E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 336 | 372 | 8.95E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 260 | 293 | 2.04E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 299 | 334 | 3.8E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 256 | 295 | 8.7E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 335 | 374 | 1.4E-13 | - |
| SMART | SM00547 | zf_4 | 345 | 369 | 1.2E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 306 | 330 | 5.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 267 | 291 | 1.4E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 265 | 294 | 9.201654 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 343 | 372 | 10.884192 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 304 | 333 | 9.212946 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 269 | 288 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 347 | 366 | - | IPR001876 |
| Coils | Coil | Coil | 210 | 230 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_008240146.1 | PREDICTED: zinc finger protein VAR3, chloroplastic [Prunus mume] | 0 |
| TrEMBL | A0A2P2IWN0 | Zinc finger protein VAR3ic OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology