Basic Information
Locus ID:
nbisL1-mrna-12329
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4561989 | 4565243 | + | nbisL1-mrna-12329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 27,396.97 Da | 29.43 | 97.83 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00180 | Isocitrate/isopropylmalate dehydrogenase | 111 | 162 | 1.2E-7 | IPR024084 |
| SUPERFAMILY | SSF53659 | Isocitrate/Isopropylmalate dehydrogenase-like | 46 | 157 | 2.88E-13 | - |
| Gene3D | G3DSA:3.40.718.10 | Isopropylmalate Dehydrogenase | 104 | 169 | 5.6E-7 | - |
| Gene3D | G3DSA:3.40.718.10 | Isopropylmalate Dehydrogenase | 36 | 103 | 3.2E-6 | - |
Gene Ontology
KEGG Pathway
Pathway:
ko00290 (Valine, leucine and isoleucine biosynthesis)
map00290 (Valine, leucine and isoleucine biosynthesis)
ko00660 (C5-Branched dibasic acid metabolism)
map00660 (C5-Branched dibasic acid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01210 (2-Oxocarboxylic acid metabolism)
map01210 (2-Oxocarboxylic acid metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80560.1 | isopropylmalate dehydrogenase 2. The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. | 0 |
| RefSeq | XP_039033544.1 | 3-isopropylmalate dehydrogenase, chloroplastic-like [Hibiscus syriacus] | 0 |
| P29102 | 3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MW14 | 3-isopropylmalate dehydrogenase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology