Basic Information
Locus ID:
nbisL1-mrna-12322
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3976287 | 3980757 | - | nbisL1-mrna-12322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 59,196.58 Da | 31.19 | 84.10 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 234 | 4.8E-5 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 5 | 33 | 5.9E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 421 | 1.42E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 341 | 6.6E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 342 | 513 | 6.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 278 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 411 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 367 | 7.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 234 | 9.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 324 | 17.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 243 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 238 | 8.623787 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.073677 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 376 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 221 | 235 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_023906381.1 | protein TOPLESS isoform X2 [Quercus suber] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A445JI11 | Protein TOPLESS isoform M OS=Glycine soja OX=3848 GN=D0Y65_021222 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11623 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020459, gene:ENSEOMG00000023519 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30099700, pistato.v30131470, pistato.v30239300 ... |
| Apiaceae | Apium graveolens | 4 | Ag1G00504, Ag4G00115, Ag8G00391, Ag9G01177 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1192 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G011540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G349600, Tel7E01G139800 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1074 |
| Rhizophoraceae | Rhizophora apiculata | 7 | nbisL1-mrna-12322, nbisL1-mrna-17438, nbisL1-mrna-17859 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17231, nbisL1-mrna-23337, nbisL1-mrna-24305 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu33348 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006615 |