Basic Information
Locus ID:
nbisL1-mrna-12315
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000149F_pilon | 1030883 | 1037953 | - | nbisL1-mrna-12315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 81,790.55 Da | 44.05 | 80.51 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 60 | 214 | 1.46106E-26 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 345 | 402 | 4.1E-11 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 20 | 218 | 6.1E-31 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 219 | 343 | 8.9E-58 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 410 | 476 | 2.7E-7 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 86 | 169 | 3.0E-9 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 219 | 343 | 2.08E-49 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 20 | 213 | 7.85E-49 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 344 | 470 | 1.04E-34 | IPR011068 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 345 | 460 | 7.5E-26 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 182 | 343 | 2.7E-63 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 53 | 172 | 1.5E-6 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 530 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_011009627.1 | PREDICTED: nuclear poly(A) polymerase 1 [Populus euphratica] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1XHU2 | polynucleotide adenylyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_015G043200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology