Basic Information
Locus ID:
nbisL1-mrna-12314
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Protein ROOT INITIATION DEFECTIVE 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 197412 | 200598 | - | nbisL1-mrna-12314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 50,075.19 Da | 50.96 | 83.80 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 148 | 0.0078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 284 | 9.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 64 | 308 | 1.19E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 152 | 3.3E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 153 | 419 | 3.9E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 284 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 151 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 113 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 234 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 193 | 7.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 285 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 177 | 202 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 293 | 10.876051 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 271 | 285 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 363 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49180.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_002322240.2 | protein ROOT INITIATION DEFECTIVE 3 [Populus trichocarpa] | 0 |
| Q9M3B4 | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7G0V2 | WD_REPEATS_REGION domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G093300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22751 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14367 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021063 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39241, Sbi_jg54566 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11100 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020711 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52544, Sgl57821 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014312, gene:ENSEOMG00000030453 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0017840, CQ.Regalona.r1.3BG0018400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028180, pistato.v30045110 |
| Apiaceae | Apium graveolens | 6 | Ag10G01297, Ag3G02015, Ag3G02016, Ag4G00225, AgUnG00518 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G015070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716222, gene-LOC120108816 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1013.V1.1, AsparagusV1_05.3476.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G05538, Ftri18G26433 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g048490.2N, BniB08g062530.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1826, Ceq09G1371 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1967, Cgl04G1865, Cgl09G1461 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g06900, gene.Cymno15g03570 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0064s00024.v1.0, Dusal.0420s00008.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g14700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.786 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004430, Pov_00035461 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G06474, Lb1G06482, Lb3G19796, Lb5G27650 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.992, BH08.1028, CH08.1139 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0018550, gene-QOZ80_4BG0347390 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0715150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032214 |
| Poaceae | Oryza coarctata | 2 | Oco13G006050, Oco14G006630 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g23580.1, LOC_Os07g22534.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G114500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402994, Pt_Chr0403072 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G016420, Chr26G003650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G608500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG051470, gene_TRIDC7BG042420 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G368600.2, TraesCS7B02G259800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb296150_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-52490, nbis-gene-53041 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19427 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1354 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14220 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1120, evm.TU.Scaffold_8_RagTag.967 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12314, nbisL1-mrna-8347, nbisL1-mrna-8426 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17851, nbisL1-mrna-20991 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12698, nbisL1-mrna-12699, nbisL1-mrna-20675 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000010l.196, evm.TU.utg000018l.309 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003490, Maker00009036 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11416, nbisL1-mrna-667 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23838, nbisL1-mrna-8772 |
| Salicaceae | Populus euphratica | 2 | populus_peu31990, populus_peu31991 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627844 |
| Solanaceae | Solanum chilense | 1 | SOLCI007408300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015803 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.7916_chr04_-, gene_1730 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2535 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15030.v3.1, Zosma05g19900.v3.1 |