Basic Information
Locus ID:
nbisL1-mrna-12307
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 26914420 | 26915080 | - | nbisL1-mrna-12307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.31 | 16,923.56 Da | 64.38 | 64.62 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039038722.1 | chlorophyllide a oxygenase, chloroplastic-like isoform X3 [Hibiscus syriacus] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17799 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12713 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030137 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19126, Sbi_jg37548 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5389 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012453 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22025, Sgl22142, Sgl27286, Sgl27400 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005312, gene:ENSEOMG00000034761 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016150, CQ.Regalona.r1.7BG0019470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022270 |
| Apiaceae | Apium graveolens | 1 | Ag9G00485 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G009860, COCNU_13G000820 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701979, gene-LOC103705850, gene-LOC120113313 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2782.V1.1, AsparagusV1_01.2783.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G01021 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012160m.g.v1.0, Thhalv10013803m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30980.v2.2, Sp6g29260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048000.2N, BniB05g023760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1055, Ceq02G1816 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1096, Cgl02G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-10314, nbisL1-mrna-12307, nbisL1-mrna-6832 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.389 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027872 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23151, Lb4G24158 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1462, AH07.3170, BH06.1477, BH07.3001, CH06.1614 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0520330, gene-QOZ80_6BG0472440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0676800.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024678, gene-QYE76_029710 |
| Poaceae | Oryza coarctata | 4 | Oco11G008800, Oco11G008810, Oco11G008890, Oco12G008840 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g29180.1, LOC_Os06g29220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G249800, gene-BS78_10G149700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403923, Pt_Chr0403963 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G005670, Chr21G006380 |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G022100, Tel4E01G022200, Tel6E01G502900 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4BG010280, gene_TRIDC5BG059530 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4B02G066400.1, TraesCS4D02G007200.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb053990_P001, Zm00001eb109380_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43776 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31862 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1362, evm.TU.LG14.649 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05210 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.165, evm.TU.Scaffold_6_RagTag.168 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14982 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-647 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006881 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11859 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17434 |
| Salicaceae | Populus euphratica | 1 | populus_peu26953 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621519 |
| Solanaceae | Solanum chilense | 1 | SOLCI003448200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011544 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23210_chr05_-, gene_13828 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2232 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07210.v3.1 |