Basic Information
Locus ID:
nbisL1-mrna-1230
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10137858 | 10142419 | - | nbisL1-mrna-1230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 16,055.16 Da | 32.69 | 79.14 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 76 | 111 | 2.2E-9 | IPR001394 |
| Pfam | PF00917 | MATH domain | 13 | 57 | 1.8E-4 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 62 | 3.76E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 67 | 126 | 1.75E-13 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 73 | 137 | 1.8E-12 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2 | 72 | 2.7E-13 | IPR008974 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 76 | 139 | 10.920252 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1 | 56 | 13.078065 | IPR002083 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_007146033.1 | hypothetical protein PHAVU_006G007000g [Phaseolus vulgaris] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5D2Z320 | Ubiquitinyl hydrolase 1 OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G081700v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology