Basic Information
Locus ID:
nbisL1-mrna-12267
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001602F_pilon | 1014568 | 1015497 | + | nbisL1-mrna-12267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 34,139.38 Da | 59.95 | 44.21 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 1.30829E-24 | - |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 1.0E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 1.1E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 6.85E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 233 | 1.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 309 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_034919986.1 | probable E3 ubiquitin-protein ligase RHC1A [Populus alba] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JMP4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology