Basic Information
Locus ID:
nbisL1-mrna-12251
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7022037 | 7023156 | + | nbisL1-mrna-12251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 9,700.01 Da | 27.56 | 74.20 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 11 | 81 | 1.7E-16 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 87 | 2.71E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 5 | 87 | 1.2E-24 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 87 | 11.747038 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_028107512.1 | small ubiquitin-related modifier 1-like [Camellia sinensis] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0F2Q3 | Small ubiquitin-related modifier OS=Actinidia rufa OX=165716 GN=Acr_08g0013560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology