Basic Information
Locus ID:
nbisL1-mrna-12244
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7068870 | 7073232 | - | nbisL1-mrna-12244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 46,009.41 Da | 53.82 | 75.11 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 1.1422E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 3.13539E-51 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 3.0E-15 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 5.3E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 255 | 335 | 1.96E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 133 | 4.19E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 134 | 4.7E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 245 | 341 | 3.9E-21 | IPR036910 |
| SMART | SM00501 | bright_3 | 36 | 127 | 3.5E-31 | IPR001606 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 4.2E-30 | - |
| SMART | SM00398 | hmgende2 | 262 | 331 | 5.1E-19 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 15.294962 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 25.846561 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 258 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021641538.1 | high mobility group B protein 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JIC1 | High mobility group B protein 15 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology