Basic Information
Locus ID:
nbisL1-mrna-12239
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7105149 | 7113005 | + | nbisL1-mrna-12239 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 83,752.91 Da | 43.14 | 71.36 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 491 | 771 | 6.16118E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 531 | 564 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 522 | 6.3E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.4E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 572 | 608 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 688 | 3.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 771 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 488 | 771 | 7.18E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 401 | 616 | 2.3E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 617 | 771 | 2.7E-30 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 691 | 730 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 688 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 732 | 771 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 564 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 608 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 522 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 647 | 73.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 532 | 564 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 531 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 739 | 771 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 609 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 657 | 697 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 532 | 564 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.630869 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 739 | 771 | 11.89286 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 509 | 523 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 509 | 523 | 8.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 551 | 565 | 8.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 758 | 771 | 8.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 393 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015574101.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFZ5 | Transcriptional corepressor LEUNIG_HOMOLOG isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology