Basic Information
Locus ID:
nbisL1-mrna-12218
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7311655 | 7315525 | - | nbisL1-mrna-12218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 103,300.79 Da | 34.29 | 106.40 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 794 | 908 | 1.9E-9 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 156 | 176 | 0.61 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 107 | 144 | 3.0E-7 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 4.2E-11 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 388 | 730 | 1.7E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 407 | 2.58E-66 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 795 | 912 | 2.08E-20 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 781 | 920 | 1.3E-28 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 392 | 730 | 2.9E-97 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 184 | 4.1E-45 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 283 | 9.7E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 284 | 391 | 2.2E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 105 | 129 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 369 | 392 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 658 | 681 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 585 | 608 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 153 | 176 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 609 | 633 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 48.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 612 | 930 | 8.471226 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63930.2 | - | 0 |
| RefSeq | XP_002299290.2 | probable leucine-rich repeat receptor-like protein kinase At2g33170 [Populus trichocarpa] | 0 |
| Q9LVP0 | Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana OX=3702 GN=At5g63930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JFP7 | Non-specific serine/threonine protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311270, gene-QOZ80_4BG0342480 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12218, nbisL1-mrna-22882 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18159 |