Basic Information
Locus ID:
nbisL1-mrna-12213
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 4331974 | 4332825 | + | nbisL1-mrna-12213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 29,348.55 Da | 50.60 | 77.03 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09280 | XPC-binding domain | 212 | 267 | 7.5E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 112 | 147 | 1.4E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 45 | 2.02E-6 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 95 | 153 | 2.28E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 208 | 274 | 6.93E-21 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 203 | 268 | 5.3E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 102 | 152 | 6.1E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 36 | 2.4E-6 | - |
| SMART | SM00165 | uba_6 | 109 | 149 | 2.3E-4 | IPR015940 |
| SMART | SM00727 | CBM | 210 | 253 | 0.001 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 2 | 282 | 9.8E-70 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 107 | 150 | 12.209535 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 35 | 9.787251 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 188 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_039042300.1 | ubiquitin receptor RAD23c-like isoform X2 [Hibiscus syriacus] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology