Basic Information
Locus ID:
nbisL1-mrna-12179
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7621620 | 7632291 | + | nbisL1-mrna-12179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 128,255.16 Da | 41.52 | 90.42 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 745 | 781 | 0.043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 589 | 0.08 | IPR001680 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 206 | 484 | 2.2E-28 | IPR000743 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 568 | 789 | 3.22E-34 | IPR011047 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 102 | 519 | 3.0E-84 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 99 | 491 | 2.5E-103 | IPR012334 |
| Gene3D | G3DSA:2.130.10.10 | - | 561 | 855 | 1.7E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 702 | 739 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 589 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 659 | 699 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 782 | 0.0081 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 749 | 791 | 9.205141 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1145 | 1160 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11240.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_012084002.1 | WD repeat-containing protein 43 isoform X1 [Jatropha curcas] | 0 |
| A7PZL3 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498HMJ4 | Utp12 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_025451 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1246, jg28071, jg5801 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2988 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37969, Sbi_jg6104 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15735 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006173 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00894, Sgl05848, Sgl05971 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002467, gene:ENSEOMG00000003655 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001010, CQ.Regalona.r1.3BG0001070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30233840 |
| Apiaceae | Apium graveolens | 1 | Ag8G01739 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G003880 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711445, gene-LOC120103686 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.135.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G19727 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11240.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012983m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g050840.2N, BniB05g026180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1094 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1191 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0093s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5458 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1246 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021743, Pov_00026073 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03039, Lb1G03061 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3934, BH01.4281, BH01.4292, CH01.4564 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244940, gene-QOZ80_3BG0283130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0383540.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_068577, gene-QYE76_068605 |
| Poaceae | Oryza coarctata | 2 | Oco05G011130, Oco06G011360 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G384000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102508, Pt_Chr0102535 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G032460, Chr12G007120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G337100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG016820, gene_TRIDC4AG016060 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G115500.1, TraesCS2D02G317700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb013980_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1906 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1409 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1177, evm.TU.LG21.809 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g16050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.618 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1351 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2115 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6319 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.841 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012566 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12179 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18212 |
| Salicaceae | Populus euphratica | 2 | populus_peu22307, populus_peu22372 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626666, gene-LOC132631616 |
| Solanaceae | Solanum chilense | 1 | SOLCI004583200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011718 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12671 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1449 |
| Zosteraceae | Zostera marina | 6 | Zosma02g06630.v3.1, Zosma02g06650.v3.1, Zosma02g06660.v3.1 ... |