Basic Information
Locus ID:
nbisL1-mrna-1217
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 4798744 | 4802791 | - | nbisL1-mrna-1217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 94,941.64 Da | 42.64 | 77.19 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 373 | 519 | 8.9E-53 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 562 | 739 | 2.1E-55 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 187 | 247 | 5.5E-16 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 617 | 742 | 2.3E-21 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 193 | 610 | 4.6E-73 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 432 | 466 | 9.821383 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 143 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_002514281.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Ricinus communis] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W5C1 | ribonuclease P OS=Manihot esculenta OX=3983 GN=MANES_03G022700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology