Basic Information
Locus ID:
nbisL1-mrna-12167
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Vacuolar cation proton exchanger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 17915440 | 17920143 | + | nbisL1-mrna-12167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 51,673.75 Da | 37.10 | 113.53 | 0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 126 | 281 | 8.3E-21 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 315 | 454 | 5.0E-19 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 155 | 458 | 1.6E-29 | IPR044880 |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 124 | 457 | 3.0E-98 | IPR004798 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 90 | 457 | 3.7E-114 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55730.1 | cation exchanger 5. member of Low affinity calcium antiporter CAX2 family | 0 |
| RefSeq | XP_015578084.1 | vacuolar cation/proton exchanger 2 isoform X1 [Ricinus communis] | 0 |
| Q8L783 | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana OX=3702 GN=CAX5 PE=2 SV=1 | 0 | |
| TrEMBL | B9SEZ0 | Vacuolar cation/proton exchanger OS=Ricinus communis OX=3988 GN=RCOM_1211410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology