halophFGD

Basic Information

Locus ID: nbisL1-mrna-12162

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: Pleckstrin homology domain.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	24145019	24147628	-	nbisL1-mrna-12162

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.84	27,383.29 Da	57.32	84.65	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50729	PH domain-like	113	229	2.46E-10	-
Gene3D	G3DSA:2.30.29.30	-	101	230	1.2E-6	IPR011993
MobiDBLite	mobidb-lite	consensus disorder prediction	10	45	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	20	45	-	-
Coils	Coil	Coil	80	107	-	-

KEGG Pathway

KO Term:

K00940 (nucleoside-diphosphate kinase [EC:2.7.4.6])

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko00983 (Drug metabolism - other enzymes) map00983 (Drug metabolism - other enzymes) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Module:

M00049 (Adenine ribonucleotide biosynthesis, IMP => ADP,ATP) M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP) M00052 (Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP) M00053 (Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP)

Reaction:

R00124 (ATP + ADP <=> ADP + ATP) R00139 (2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate + ATP <=> 2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate + ADP) R00156 (ATP + UDP <=> ADP + UTP) R00330 (ATP + GDP <=> ADP + GTP) R00570 (ATP + CDP <=> ADP + CTP) R00722 (ATP + IDP <=> ADP + ITP) R01137 (ATP + dADP <=> ADP + dATP) R01857 (ATP + dGDP <=> ADP + dGTP) R02093 (ATP + dTDP <=> ADP + dTTP) R02326 (ATP + dCDP <=> ADP + dCTP) R02331 (ATP + dUDP <=> ADP + dUTP) R03530 (ATP + dIDP <=> ADP + dITP) R11894 (ATP + 5-Fluorouridine diphosphate <=> ADP + 5-Fluorouridine triphosphate) R11895 (ATP + 5-Fluorodeoxyuridine diphosphate <=> ADP + 5-Fluorodeoxyuridine triphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23895.1	Pleckstrin homology (PH) domain-containing protein.
RefSeq	XP_038996304.1	uncharacterized protein LOC120120843 [Hibiscus syriacus]
TrEMBL	A0A7J8V2Z6	PH domain-containing protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009483 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg23562, jg7698
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15146
Amaranthaceae	Atriplex hortensis	1	Ah003878
Amaranthaceae	Beta vulgaris	1	BVRB_5g098770
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24038, Sbi_jg7886
Amaranthaceae	Salicornia europaea	1	Seu_jg12159
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00010649
Amaranthaceae	Suaeda glauca	2	Sgl52218, Sgl57490
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004303, gene:ENSEOMG00000023988 ... gene:ENSEOMG00000025183
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5AG0005760
Arecaceae	Cocos nucifera	2	COCNU_06G005220, COCNU_14G003430
Arecaceae	Phoenix dactylifera	2	gene-LOC103709541, gene-LOC103714194
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.1974.V1.1
Asteraceae	Flaveria trinervia	1	Ftri13G33548
Brassicaceae	Arabidopsis thaliana	1	AT4G23895.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10026064m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g21860.v2.2
Brassicaceae	Brassica nigra	2	BniB02g080860.2N, BniB03g013680.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G0572
Casuarinaceae	Casuarina glauca	1	Cgl03G0680
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno16g03310
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g12100
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-12162
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1544
Plantaginaceae	Plantago ovata	1	Pov_00028475
Plumbaginaceae	Limonium bicolor	2	Lb2G08132, Lb2G13687
Poaceae	Echinochloa crus-galli	3	BH05.1237, CH01.2734, CH05.1468
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0392410, gene-QOZ80_5BG0438780
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0095220.1
Poaceae	Oryza coarctata	2	Oco09G018560, Oco10G018520
Poaceae	Oryza sativa	1	LOC_Os05g51710.1
Poaceae	Paspalum vaginatum	1	gene-BS78_09G261300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0200596, Pt_Chr0505947
Poaceae	Sporobolus alterniflorus	2	Chr04G016110, Chr06G016850
Poaceae	Thinopyrum elongatum	1	Tel1E01G751800
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG037210, gene_TRIDC1BG074430
Poaceae	Triticum aestivum	4	TraesCS1A02G350700.1, TraesCS1B02G478900.1 ... TraesCS1D02G452400.1, TraesCS2A02G207700.1
Poaceae	Zea mays	1	Zm00001eb297840_P001
Poaceae	Zoysia japonica	1	nbis-gene-30212
Poaceae	Zoysia macrostachya	1	Zma_g25903
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.3268, evm.TU.LG10.111, evm.TU.LG16.333 ... evm.TU.LG17.111
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g05330
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.96
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-18307
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8633
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000007l.336
Rhizophoraceae	Kandelia obovata	1	Maker00018472
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15965
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-10997
Salicaceae	Populus euphratica	2	populus_peu03693, populus_peu34541
Solanaceae	Lycium barbarum	3	gene-LOC132603801, gene-LOC132620383, gene-LOC132634778
Solanaceae	Solanum chilense	2	SOLCI002348700, SOLCI006524800
Solanaceae	Solanum pennellii	2	gene-LOC107005558, gene-LOC107027896
Tamaricaceae	Reaumuria soongarica	2	STRG.23324_chr05_-, gene_9672
Tamaricaceae	Tamarix chinensis	2	TC01G3075, TC06G0102
Zosteraceae	Zostera marina	1	Zosma05g05480.v3.1