Basic Information
Locus ID:
nbisL1-mrna-12156
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7867489 | 7870787 | + | nbisL1-mrna-12156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 58,690.61 Da | 58.14 | 56.90 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 426 | 483 | 1.4E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 246 | 302 | 5.3E-26 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 417 | 485 | 1.7E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 244 | 304 | 2.75E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 235 | 305 | 8.7E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 410 | 486 | 1.8E-36 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 425 | 484 | 1.8E-39 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 245 | 303 | 7.6E-38 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 240 | 304 | 24.592686 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 420 | 485 | 38.847618 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03340.1 | WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3). | 0 |
| RefSeq | XP_021678796.1 | probable WRKY transcription factor 4 isoform X1 [Hevea brasiliensis] | 0 |
| Q9ZQ70 | Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LK96 | Uncharacterized protein WRKY transcription factor 06 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology