Basic Information
Locus ID:
nbisL1-mrna-12143
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 17698004 | 17716587 | + | nbisL1-mrna-12143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 23,719.14 Da | 41.64 | 90.39 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 150 | 182 | 6.7E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 146 | 191 | 1.03E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 142 | 191 | 1.9E-8 | - |
| SMART | SM00256 | fbox_2 | 150 | 190 | 1.6E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 144 | 180 | 9.338503 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57590.2 | - | 0 |
| RefSeq | XP_050208706.1 | F-box protein At5g65850-like [Mercurialis annua] | 0 |
| Q9SVX4 | F-box protein At3g57590 OS=Arabidopsis thaliana OX=3702 GN=At3g57590 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R6QIK3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1496, gene_23374 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015300, COCNU_07G015310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8264 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1529, evm.TU.LG22.421 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.534, evm.TU.Scaffold_5_RagTag.1577 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12069, nbisL1-mrna-12143, nbisL1-mrna-12163 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.160 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15516, nbisL1-mrna-23528 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132600105, gene-LOC132602587, gene-LOC132614123 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000612100, SOLCI004908700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003485, gene-LOC107004245, gene-LOC107004251 |