Basic Information
Locus ID:
nbisL1-mrna-12136
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23648496 | 23650486 | - | nbisL1-mrna-12136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 30,318.55 Da | 56.16 | 65.21 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 19 | 99 | 1.6E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 196 | 254 | 1.3E-27 | IPR039512 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 159 | 191 | 5.7E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 197 | 1.09E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 90 | 119 | 1.06E-8 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 88 | 1.19E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 221 | 3.0E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 222 | 259 | 2.7E-18 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 12 | 87 | 25.717133 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 89 | 163 | 16.573513 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_012456965.1 | E3 ubiquitin-protein ligase MIEL1 [Gossypium raimondii] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2T8N1 | E3 ubiquitin-protein ligase MIEL1-like OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G190100v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology