Basic Information
Locus ID:
nbisL1-mrna-12111
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 17494468 | 17496394 | - | nbisL1-mrna-12111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 41,520.09 Da | 33.00 | 95.60 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 199 | 327 | 7.8E-13 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 37 | 111 | 9.0E-6 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 328 | 2.22E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 32 | 174 | 6.93E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 165 | 328 | 1.1E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 164 | 4.1E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 328 | 6.0E-12 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 325 | 12.677628 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 26 | 174 | 10.818394 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 365 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_021680099.1 | fasciclin-like arabinogalactan protein 2 [Hevea brasiliensis] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6KWA7 | Fasciclin-like arabinogalactan protein 2 OS=Hevea brasiliensis OX=3981 GN=GH714_023004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology