Basic Information
Locus ID:
nbisL1-mrna-12109
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23356705 | 23359992 | + | nbisL1-mrna-12109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 90,907.49 Da | 45.51 | 71.98 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 460 | 512 | 8.5E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 705 | 756 | 1.6E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 186 | 233 | 1.7E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 307 | 357 | 2.6E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 408 | 450 | 3.5E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 698 | 759 | 1.13E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 54 | 111 | 1.08E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 279 | 358 | 5.13E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 5 | 51 | 4.54E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 428 | 515 | 2.88E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 560 | 642 | 2.77E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 156 | 246 | 5.23E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 371 | 8.2E-6 | IPR013083 |
| SMART | SM00249 | PHD_3 | 424 | 489 | 11.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 264 | 333 | 3.2 | IPR001965 |
| SMART | SM00249 | PHD_3 | 556 | 613 | 3.9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 23 | 83 | 9.6 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 189 | 240 | 8.5143 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19650.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_039057801.1 | uncharacterized protein LOC120201213 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6P5WU81 | uncharacterized protein LOC111277538 OS=Durio zibethinus OX=66656 GN=LOC111277538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |