Basic Information
Locus ID:
nbisL1-mrna-12099
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Domain of unknown function (DUF569)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8295010 | 8297932 | - | nbisL1-mrna-12099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 53,463.57 Da | 52.36 | 69.74 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 3.7E-62 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 170 | 310 | 1.5E-72 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 5 | 148 | 3.27E-23 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 174 | 315 | 2.22E-22 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 5 | 148 | 1.4E-17 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 178 | 295 | 1.4E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 359 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_024454864.2 | uncharacterized protein LOC7494585 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K2ATX1 | DUF569 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G130200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology