Basic Information
Locus ID:
nbisL1-mrna-12085
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 3017673 | 3019004 | - | nbisL1-mrna-12085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 48,571.12 Da | 56.95 | 76.34 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 188 | 231 | 9.845E-18 | - |
| Pfam | PF13639 | Ring finger domain | 188 | 231 | 2.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 237 | 4.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 238 | 2.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 230 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 231 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 316 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002534099.3 | RING-H2 finger protein ATL54 [Ricinus communis] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JII6 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology