Basic Information
Locus ID:
nbisL1-mrna-12074
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8545393 | 8547888 | + | nbisL1-mrna-12074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 21,043.27 Da | 51.88 | 69.84 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 10 | 143 | 3.40814E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 12 | 142 | 6.8E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 149 | 9.91E-46 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 162 | 1.0E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 2.7E-45 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.063454 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 187 | - | - |
| Coils | Coil | Coil | 132 | 152 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_021598430.1 | ubiquitin-conjugating enzyme E2-23 kDa [Manihot esculenta] | 0 |
| P16577 | Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2R3 | UBC core domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology