Basic Information
Locus ID:
nbisL1-mrna-12063
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 2884997 | 2890050 | - | nbisL1-mrna-12063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 74,740.74 Da | 53.12 | 68.70 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 74 | 111 | 5.9E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 427 | 494 | 8.8E-13 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 69 | 115 | 4.36E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 338 | 496 | 3.14E-33 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 58 | 116 | 4.3E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 306 | 503 | 2.7E-37 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 256 | 517 | 16.92852 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.524889 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 74 | 111 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 546 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021630602.1 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Manihot esculenta] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JJZ9 | Uncharacterized protein MANES_12G127400 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology