Basic Information
Locus ID:
nbisL1-mrna-12045
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 2738010 | 2745197 | + | nbisL1-mrna-12045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 77,284.35 Da | 38.87 | 71.88 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 493 | 681 | 8.02315E-49 | - |
| CDD | cd10320 | RGL4_N | 86 | 344 | 1.06206E-59 | - |
| CDD | cd10316 | RGL4_M | 384 | 481 | 2.74113E-31 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 85 | 253 | 8.9E-60 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 491 | 680 | 5.8E-49 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 405 | 476 | 1.8E-22 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 488 | 681 | 2.21E-39 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 86 | 327 | 1.51E-10 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 381 | 481 | 6.28E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 381 | 477 | 3.4E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 489 | 681 | 1.9E-13 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 80 | 358 | 2.9E-17 | IPR014718 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology