Basic Information
Locus ID:
nbisL1-mrna-12044
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 2725886 | 2731316 | + | nbisL1-mrna-12044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 69,937.88 Da | 30.78 | 74.97 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 14 | 278 | 1.14237E-56 | - |
| CDD | cd10316 | RGL4_M | 318 | 415 | 4.23856E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 427 | 615 | 2.7659E-47 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 19 | 62 | 3.0E-8 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 425 | 614 | 1.9E-48 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 64 | 187 | 2.6E-51 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 340 | 409 | 2.1E-22 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 314 | 414 | 2.55E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 422 | 615 | 1.45E-39 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 25 | 278 | 3.77E-9 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 14 | 292 | 1.2E-16 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 315 | 408 | 2.0E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 423 | 615 | 4.8E-13 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_012081708.1 | probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology