Basic Information
Locus ID:
nbisL1-mrna-12043
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 2717333 | 2720574 | + | nbisL1-mrna-12043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 56,556.96 Da | 35.03 | 70.69 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 302 | 490 | 9.47617E-48 | - |
| CDD | cd10320 | RGL4_N | 1 | 151 | 9.99107E-50 | - |
| CDD | cd10316 | RGL4_M | 191 | 288 | 2.05235E-34 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 214 | 286 | 1.7E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 300 | 489 | 9.2E-49 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 60 | 8.2E-24 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 297 | 490 | 2.25E-42 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 57 | 152 | 5.34E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 191 | 290 | 7.06E-10 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 298 | 490 | 1.2E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 189 | 287 | 2.7E-8 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 166 | 2.4E-8 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_037492290.1 | probable rhamnogalacturonate lyase B isoform X3 [Jatropha curcas] | 0 |
| TrEMBL | A0A067K103 | rhamnogalacturonan endolyase OS=Jatropha curcas OX=180498 GN=JCGZ_18737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology